Software

Mirheo

Mirheo is a high performance computing software primarily designed to simulate blood flow, microfluidics and the evolution of rigid microswimmers. The code is written in C++/CUDA/MPI and targets GPU clusters.

Github: https://github.com/cselab/Mirheo

Documentation: web format, also available in pdf

Artificial Bacterial Flagellum swimming in blood. Simulation with Mirheo, rendering with Paraview 5.9.

SdfTools

A simple tool written in C++ with python bindings to generate geometries signed distance function (SDF). The tool composes simple shapes to generate complex geometries.

Github: https://github.com/amlucas/sdfTools

Documentation: https://sdftools.readthedocs.io/en/latest/

stochsim

Stochastic simulation processes with python and json interface.

Github: https://github.com/amlucas/stochsim